Xenium spatial transcriptomics of Bronchopulmonary Dysplasia and matched neonatal controls
, *Corresponding author
Description
LungMAP pilot experiment to assess distinct healthy control sample lung biopsy regions and a BPD control biopsy from the BRINDL repository.
Dataset ID
LMEX0000090002
Assay Type
Xenium
Organism
Human
Technology
10x Genomics Xenium
| Sample | Donor | Age | Health Status | Sample Type | Tobacco | Cell Count | GEO Sample |
|---|---|---|---|---|---|---|---|
| Region_1 | Cntrl-1 | 14168 | |||||
| Region_10 | Cntrl-1 | 16014 | |||||
| Region_11 | Cntrl-1 | 5499 | |||||
| Region_2 (0021229) | Cntrl-1 | 6832 | |||||
| Region_3 | Cntrl-1 | 23228 | |||||
| Region_4 | Cntrl-1 | 14610 | |||||
| Region_5 | Cntrl-1 | 9905 | |||||
| Region_6 | Cntrl-1 | 8118 | |||||
| Region_7 | Cntrl-1 | 13306 | |||||
| D227 | D227 | 18 months | BPD | Prematurity Complications - Other | 68062 |
| LungMAP ID | Alt ID | Species | Sex | Race | Age | Age Group | GA at Birth | CGA | Weight | Weight Percentile | Cause of Death | Type of Death |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| LMSP0000001389 | D227 | Homo sapiens | Female | White | 18 months | Child | 23 weeks, 3 days | 109.57 weeks | 11.79 kg | 80 | Prematurity Complications - Other | DCD (circulatory death) |
| LMSP0000090027 | Region_1 | Homo sapiens | ||||||||||
| LMSP0000090028 | Region_10 | Homo sapiens | ||||||||||
| LMSP0000090029 | Region_11 | Homo sapiens | ||||||||||
| LMSP0000090030 | Region_2 (0021229) | Homo sapiens | ||||||||||
| LMSP0000090031 | Region_3 | Homo sapiens | ||||||||||
| LMSP0000090032 | Region_4 | Homo sapiens | ||||||||||
| LMSP0000090033 | Region_5 | Homo sapiens | ||||||||||
| LMSP0000090034 | Region_6 | Homo sapiens | ||||||||||
| LMSP0000090035 | Region_7 | Homo sapiens |
1 of this study's 10 samples were also assayed by 1 other LungMAP studies, across 1 modality. Click any node to list those studies. The other 9 appear in no other study and are not drawn.