RNA-seq expression profiling of alveolar parenchyma isolated using laser capture microdissection from human donors

Namasivayam Ambalavanan¹, Naftali Kaminski², Gloria Pryhuber³

¹University of Alabama at Birmingham, ²Yale School of Medicine, ³University of Rochester Medical Center, ^*Corresponding author

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Description RNA-seq expression profiling of alveolar parenchyma isolated using laser capture microdissection from human donors

Dataset ID LMEX0000001631

Assay Type RNA-seq

Organism Human

Stages Neonate | Infant | Child

Sample Count 19

Sample Prep Lmdata:sample_type_lcm

File	Description	Size
Data Table		5.5 MB
Sample Metadata		10.3 KB

LungMAP ID	Alt ID	Species	Sex	Race	Age	Age Group	GA at Birth	CGA	Weight	Weight Percentile	Cause of Death	Type of Death
LMSP0000000032	D001	Homo sapiens	Female	African American	20 months	Child			13 kg	93	Trauma - Auto Accident	DBD (after brain death)
LMSP0000000127	D002	Homo sapiens	Female	White	2 months	Infant			5 kg	10	Anoxic/Hypoxic Brain Injury - SIDS	DBD (after brain death)
LMSP0000000128	D004	Homo sapiens	Male	White	5 days	Neonate	41 weeks	41.71 weeks	3.63 kg	63	Anoxic/Hypoxic Brain Injury - Neonatal HIE	DBD (after brain death)
LMSP0000000129	D005	Homo sapiens	Male	White	1 days	Neonate	39 weeks, 6 days	39.86 weeks	2.87 kg	17	Congenital Anomaly - Brain	DCD (circulatory death)
LMSP0000000130	D006	Homo sapiens	Female	White	19 months	Child	40 weeks		12.7 kg	93	Toxin or Drug Exposure	DBD (after brain death)
LMSP0000000034	D007	Homo sapiens	Male	African American	4 years	Child			15.42 kg	21	Trauma - Isolated Head Trauma	DBD (after brain death)
LMSP0000000131	D008	Homo sapiens	Female	White	20 months	Child			12.25 kg	86	Trauma - Auto Accident	DBD (after brain death)
LMSP0000000134	D011	Homo sapiens	Female	White	20 months	Child	40 weeks		10.89 kg	53	Anoxic/Hypoxic Brain Injury - Drowning	DBD (after brain death)
LMSP0000000137	D014	Homo sapiens	Male	African American	21 months	Child			11.79 kg	52	Anoxic/Hypoxic Brain Injury - Asphyxia	DBD (after brain death)
LMSP0000000138	D015	Homo sapiens	Female	White	3 years	Child	25 weeks, 3 days	227.43 weeks	13 kg	6.4	Prematurity Complications - Other	DBD (after brain death)
LMSP0000000139	D016	Homo sapiens	Male	African American	9 years	Child			40 kg	95	Trauma - Auto Accident	DBD (after brain death)
LMSP0000000141	D018	Homo sapiens	Female	White	3 years	Child			15 kg	73	Anoxic/Hypoxic Brain Injury - Drowning	DBD (after brain death)
LMSP0000000142	D019	Homo sapiens	Male	White	1 days	Neonate	37 weeks, 3 days	37.43 weeks			Congenital Anomaly - Brain	DCD (circulatory death)
LMSP0000000143	D020	Homo sapiens	Male	Other	24 days	Neonate	41 weeks, 1 days	44.57 weeks	4.08 kg	39	Anoxic/Hypoxic Brain Injury - SIDS	DBD (after brain death)
LMSP0000000149	D027	Homo sapiens	Male	White	9 years	Child			47.17 kg	97	Anoxic/Hypoxic Brain Injury - Other	DCD (circulatory death)
LMSP0000000152	D031	Homo sapiens	Male	White	7 months	Infant	40 weeks		7.26 kg	7.4	Anoxic/Hypoxic Brain Injury - SIDS	DBD (after brain death)
LMSP0000000157	D036	Homo sapiens	Male	White	8 years	Child			34 kg	89	Trauma - Isolated Head Trauma	DBD (after brain death)
LMSP0000000161	D040	Homo sapiens	Male	African American	2 months	Infant			4.2 kg	0.2	Trauma - Other	DBD (after brain death)
LMSP0000000219	DP02	Homo sapiens	Female	White	1 day	Neonate			2.1 kg	0.4	Congenital Anomaly	DCD (circulatory death)

19 of this study's 19 samples were also assayed by 230 other LungMAP studies, across 10 modalities. Click any node to list those studies.

Shared samples by study