Infinium MethylationEPIC BeadChip array profiling of laser capture microdissection samples of whole lung from human subjects

Jim Hagood¹, Namasivayam Ambalavanan², Gloria Pryhuber³

¹University of California, San Diego, ²University of Alabama at Birmingham, ³University of Rochester Medical Center, ^*Corresponding author

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Description Infinium MethylationEPIC BeadChip array profiling of laser capture microdissection samples of whole lung from human subjects

Dataset ID LMEX0000001628

Assay Type Methylation array

Organism Human

Stages Neonate | Infant | Child | Adult

Sample Count 24

Sample Prep Lmdata:sample_type_lcm

Technology Illumina Infinium MethylationEPIC BeadChip

File	Description	Size
Raw Array Results		3.7 GB
Sample Metadata		1.1 KB

LungMAP ID	Alt ID	Species	Sex	Race	Age	Age Group	GA at Birth	CGA	Weight	Weight Percentile	Cause of Death	Type of Death
LMSP0000000127	D002	Homo sapiens	Female	White	2 months	Infant			5 kg	10	Anoxic/Hypoxic Brain Injury - SIDS	DBD (after brain death)
LMSP0000000128	D004	Homo sapiens	Male	White	5 days	Neonate	41 weeks	41.71 weeks	3.63 kg	63	Anoxic/Hypoxic Brain Injury - Neonatal HIE	DBD (after brain death)
LMSP0000000129	D005	Homo sapiens	Male	White	1 days	Neonate	39 weeks, 6 days	39.86 weeks	2.87 kg	17	Congenital Anomaly - Brain	DCD (circulatory death)
LMSP0000000034	D007	Homo sapiens	Male	African American	4 years	Child			15.42 kg	21	Trauma - Isolated Head Trauma	DBD (after brain death)
LMSP0000000137	D014	Homo sapiens	Male	African American	21 months	Child			11.79 kg	52	Anoxic/Hypoxic Brain Injury - Asphyxia	DBD (after brain death)
LMSP0000000139	D016	Homo sapiens	Male	African American	9 years	Child			40 kg	95	Trauma - Auto Accident	DBD (after brain death)
LMSP0000000141	D018	Homo sapiens	Female	White	3 years	Child			15 kg	73	Anoxic/Hypoxic Brain Injury - Drowning	DBD (after brain death)
LMSP0000000142	D019	Homo sapiens	Male	White	1 days	Neonate	37 weeks, 3 days	37.43 weeks			Congenital Anomaly - Brain	DCD (circulatory death)
LMSP0000000143	D020	Homo sapiens	Male	Other	24 days	Neonate	41 weeks, 1 days	44.57 weeks	4.08 kg	39	Anoxic/Hypoxic Brain Injury - SIDS	DBD (after brain death)
LMSP0000000149	D027	Homo sapiens	Male	White	9 years	Child			47.17 kg	97	Anoxic/Hypoxic Brain Injury - Other	DCD (circulatory death)
LMSP0000000152	D031	Homo sapiens	Male	White	7 months	Infant	40 weeks		7.26 kg	7.4	Anoxic/Hypoxic Brain Injury - SIDS	DBD (after brain death)
LMSP0000000153	D032	Homo sapiens	Male	White	3 years	Child	40 weeks		18.14 kg	92	Trauma - Isolated Head Trauma	DBD (after brain death)
LMSP0000000157	D036	Homo sapiens	Male	White	8 years	Child			34 kg	89	Trauma - Isolated Head Trauma	DBD (after brain death)
LMSP0000000159	D038	Homo sapiens	Female	Unknown or Not Reported	1 days	Neonate	39 weeks, 3 days	39.57 weeks	2.27 kg	1.2	Congenital Anomaly - Brain	DCD (circulatory death)
LMSP0000000161	D040	Homo sapiens	Male	African American	2 months	Infant			4.2 kg	0.2	Trauma - Other	DBD (after brain death)
LMSP0000000163	D042	Homo sapiens	Male	White	23 years	Adult			85 kg		Trauma - Firearm	DCD (circulatory death)
LMSP0000000177	D056	Homo sapiens	Male	White	5 years	Child			22.23 kg	77	Trauma - Auto Accident	DBD (after brain death)
LMSP0000000178	D057	Homo sapiens	Female	African American	5 years	Child			19 kg	36	Lung Disease - Other	DBD (after brain death)
LMSP0000000180	D059	Homo sapiens	Female	White	4 days	Neonate	38 weeks, 4 days	39.14 weeks	3.63 kg	76	Anoxic/Hypoxic Brain Injury - Neonatal HIE	DCD (circulatory death)
LMSP0000000185	D064	Homo sapiens	Male	African American	9 years	Child			32.66 kg	61	Anoxic/Hypoxic Brain Injury - Drowning	DBD (after brain death)
LMSP0000000190	D069	Homo sapiens	Female	Asian	4 months	Infant	40 weeks, 3 days	60 weeks	6 kg	19	Anoxic/Hypoxic Brain Injury - Other	DCD (circulatory death)
LMSP0000000191	D070	Homo sapiens	Male	American Indian/Alaska Native	4 years	Child			13.15 kg	2.6	Stroke or Intracranial Hemorrhage	DCD (circulatory death)
LMSP0000000193	D072	Homo sapiens	Female	White	14 months	Child			12 kg	97	Anoxic/Hypoxic Brain Injury - Drowning	DBD (after brain death)
LMSP0000000219	DP02	Homo sapiens	Female	White	1 day	Neonate			2.1 kg	0.4	Congenital Anomaly	DCD (circulatory death)

24 of this study's 24 samples were also assayed by 270 other LungMAP studies, across 10 modalities. Click any node to list those studies.

Shared samples by study