Single-cell RNA-seq analysis of Interstitial Lung Disease (ILD) subtypes
Jonathan A. Kropski1, Nicholas E. Banovich2*
1Vanderbilt University Medical Center, 2Translational Genomics Research Institute, *Corresponding author
Description
scRNA-seq profiles for 114 individuals, including 66 (58%) with ILD and 48 (42%) unaffected donors. The ILD lungs included samples from 39 individuals with IPF and 27 with other forms of pulmonary fibrosis, including sarcoidosis (n = 4), connective tissue disease-associated ILD (n = 3), idiopathic nonspecific interstitial pneumonia (n = 3), coal worker’s pneumoconiosis (n = 3), chronic hypersensitivity pneumonitis (n = 2), interstitial pneumonia with autoimmune features (n = 2) and unclassifiable ILD (n = 10). Most (67%) the lung samples were from individuals with self-reported ethnicity of European ancestry; 53 (46%) reported past or present tobacco use.
LungMAP ID: LMEX0000004403
Organism: human
Stages: adult
Assay type: Single-cell RNA-seq
External databases: missing missing
LungMAP IDAlt IDSpeciesSexRaceAgeAge GroupGA at BirthCGAWeightWeight PercentileCause of DeathType of DeathHealth Status
LMSP0000001419THD0001Homo sapiensMaleEuropean36 yearsAdultNo known lung disease
LMSP0000001420THD0002Homo sapiensFemaleAmerican Indian/Alaska Native39 yearsAdultNo known lung disease
LMSP0000001421THD0005Homo sapiensMaleEuropean59 yearsAdultNo known lung disease
LMSP0000001430THD0006Homo sapiensMaleEuropean35 yearsAdultNo known lung disease
LMSP0000001431THD0007Homo sapiensMaleEuropean57 yearsAdultNo known lung disease
LMSP0000001432THD0008Homo sapiensMaleEuropean53 yearsAdultNo known lung disease
LMSP0000001433THD0009Homo sapiensFemaleEuropean54 yearsAdultNo known lung disease
LMSP0000001445THD0010Homo sapiensMaleHispanic/Latino47 yearsAdultNo known lung disease
LMSP0000001434THD0012Homo sapiensMaleEuropean40 yearsAdultNo known lung disease
LMSP0000001450THD0014Homo sapiensMaleEuropean64 yearsAdultNo known lung disease
LMSP0000001454THD0015Homo sapiensMaleEuropean58 yearsAdultNo known lung disease
LMSP0000001472THD0016Homo sapiensMaleUnknown or Not Reported45 yearsAdultNo known lung disease
LMSP0000001473THD0017Homo sapiensMaleUnknown or Not Reported AdultNo known lung disease
LMSP0000001474THD0019Homo sapiensMaleUnknown or Not Reported AdultNo known lung disease
LMSP0000001475THD0020Homo sapiensMaleUnknown or Not Reported AdultNo known lung disease
LMSP0000001480THD0021Homo sapiensFemaleUnknown or Not Reported60 yearsAdultNo known lung disease
LMSP0000001481THD0022Homo sapiensMaleUnknown or Not Reported50 yearsAdultNo known lung disease
LMSP0000001482THD0023Homo sapiensFemaleUnknown or Not Reported44 yearsAdultNo known lung disease
LMSP0000001483THD0026Homo sapiensUnknownUnknown or Not Reported AdultNo known lung disease
LMSP0000001495TILD001Homo sapiensMaleHispanic/Latino65 yearsAdultIPF
LMSP0000001422TILD006Homo sapiensFemaleHispanic/Latino72 yearsAdultIPF
LMSP0000001423TILD010Homo sapiensFemaleEuropean74 yearsAdultIPF
LMSP0000001424TILD015Homo sapiensMaleEuropean67 yearsAdultIPF
LMSP0000001425TILD019Homo sapiensMaleEuropean56 yearsAdultILD
LMSP0000001426TILD028Homo sapiensFemaleEuropean54 yearsAdultIPF
LMSP0000001427TILD030Homo sapiensMaleEuropean68 yearsAdultSarcoidosis
LMSP0000001497TILD037Homo sapiensMaleEuropean63 yearsAdultIPF
LMSP0000001498TILD039Homo sapiensMaleEuropean70 yearsAdultILD
LMSP0000001499TILD041Homo sapiensMaleEuropean69 yearsAdultILD
LMSP0000001435TILD049Homo sapiensMaleEuropean67 yearsAdultILD
LMSP0000001436TILD051Homo sapiensMaleEuropean71 yearsAdultIPF
LMSP0000001437TILD055Homo sapiensFemaleEuropean43 yearsAdultIPF
LMSP0000001438TILD059Homo sapiensMaleEuropean70 yearsAdultIPF
LMSP0000001455TILD060Homo sapiensUnknownUnknown or Not Reported AdultIPF
LMSP0000001439TILD062Homo sapiensMaleEuropean62 yearsAdultSarcoidosis
LMSP0000001451TILD074Homo sapiensMaleEuropean60 yearsAdultIPF
LMSP0000001456TILD080Homo sapiensMaleUnknown or Not Reported63 yearsAdultILD
LMSP0000001452TILD084Homo sapiensMaleEuropean69 yearsAdultIPF
LMSP0000001453TILD102Homo sapiensUnknownUnknown or Not Reported AdultHP
LMSP0000001476TILD103Homo sapiensFemaleUnknown or Not Reported AdultILD
LMSP0000001507TILD109Homo sapiensMaleEuropean71 yearsAdultIPF
LMSP0000001508TILD111Homo sapiensMaleEuropean70 yearsAdultIPF
LMSP0000001509TILD113Homo sapiensUnknownUnknown or Not Reported AdultIPF
LMSP0000001477TILD116Homo sapiensUnknownUnknown or Not Reported AdultIPF
LMSP0000001484TILD123Homo sapiensMaleEuropean50 yearsAdultILD
LMSP0000001478TILD126Homo sapiensMaleUnknown or Not Reported AdultIPF
LMSP0000001485TILD136Homo sapiensMaleEuropean73 yearsAdultILD
LMSP0000001428VUHD071Homo sapiensMaleEuropean38 yearsAdultNo known lung disease
LMSP0000001500VUHD072Homo sapiensFemaleEuropean71 yearsAdultNo known lung disease
LMSP0000001501VUHD073Homo sapiensFemaleEuropean55 yearsAdultNo known lung disease
LMSP0000001502VUHD077Homo sapiensFemaleEuropean55 yearsAdultNo known lung disease
LMSP0000001503VUHD078Homo sapiensMaleEuropean27 yearsAdultNo known lung disease
LMSP0000001510VUHD101Homo sapiensMaleUnknown or Not Reported25 yearsAdultNo known lung disease
LMSP0000001461VUHD103Homo sapiensMaleEuropean55 yearsAdultNo known lung disease
LMSP0000001462VUHD104Homo sapiensMaleAfrican American29 yearsAdultNo known lung disease
LMSP0000001463VUHD106Homo sapiensMaleEuropean49 yearsAdultNo known lung disease
LMSP0000001464VUHD107Homo sapiensMaleEuropean25 yearsAdultNo known lung disease
LMSP0000001486VUHD108Homo sapiensUnknownUnknown or Not Reported AdultNo known lung disease
LMSP0000001487VUHD111Homo sapiensUnknownUnknown or Not Reported AdultNo known lung disease
LMSP0000001488VUHD112Homo sapiensMaleEuropean19 yearsAdultNo known lung disease
LMSP0000001489VUHD113Homo sapiensFemaleEuropean40 yearsAdultNo known lung disease
LMSP0000001490VUHD114Homo sapiensUnknownUnknown or Not Reported AdultNo known lung disease
LMSP0000001491VUHD115Homo sapiensFemaleEuropean60 yearsAdultNo known lung disease
LMSP0000001492VUHD117Homo sapiensMaleEuropean50 yearsAdultNo known lung disease
LMSP0000001512VUHD65Homo sapiensMaleEuropean17 yearsAdultNo known lung disease
LMSP0000001513VUHD66Homo sapiensMaleEuropean30 yearsAdultNo known lung disease
LMSP0000001515VUHD67Homo sapiensFemaleUnknown or Not Reported30 yearsAdultNo known lung disease
LMSP0000001516VUHD68Homo sapiensMaleEuropean41 yearsAdultNo known lung disease
LMSP0000001496VUHD69Homo sapiensFemaleAfrican American31 yearsAdultNo known lung disease
LMSP0000001519VUHD70Homo sapiensMaleEuropean AdultNo known lung disease
LMSP0000001440VUHD84Homo sapiensFemaleEuropean34 yearsAdultNo known lung disease
LMSP0000001441VUHD85Homo sapiensMaleAfrican American53 yearsAdultNo known lung disease
LMSP0000001457VUHD92Homo sapiensMaleAfrican American55 yearsAdultNo known lung disease
LMSP0000001458VUHD94Homo sapiensMaleCaucasian62 yearsAdultNo known lung disease
LMSP0000001459VUHD95Homo sapiensFemaleEuropean64 yearsAdultNo known lung disease
LMSP0000001460VUHD98Homo sapiensMaleEuropean69 yearsAdultNo known lung disease
LMSP0000001479VUILD100Homo sapiensMaleEuropean56 yearsAdultIPAF
LMSP0000001493VUILD102Homo sapiensMaleEuropean58 yearsAdultIPF
LMSP0000001494VUILD104Homo sapiensMaleEuropean69 yearsAdultIPF
LMSP0000001520VUILD48Homo sapiensMaleEuropean52 yearsAdultNSIP
LMSP0000001522VUILD53Homo sapiensFemaleEuropean56 yearsAdultIPF
LMSP0000001521VUILD54Homo sapiensMaleAfrican American57 yearsAdultcHP
LMSP0000001523VUILD55Homo sapiensMaleAfrican American46 yearsAdultNSIP
LMSP0000001514VUILD57Homo sapiensFemaleAfrican American58 yearsAdultSarcoidosis
LMSP0000001524VUILD58Homo sapiensMaleEuropean60 yearsAdultcHP
LMSP0000001517VUILD59Homo sapiensMaleEuropean69 yearsAdultIPF
LMSP0000001518VUILD60Homo sapiensMaleAfrican American59 yearsAdultIPF
LMSP0000001525VUILD61Homo sapiensMaleEuropean66 yearsAdultIPF
LMSP0000001526VUILD62Homo sapiensFemaleEuropean55 yearsAdultNSIP
LMSP0000001527VUILD63Homo sapiensFemaleAfrican American64 yearsAdultIPF
LMSP0000001429VUILD64Homo sapiensMaleEuropean68 yearsAdultIPF
LMSP0000001504VUILD67Homo sapiensMaleAfrican American64 yearsAdultIPF
LMSP0000001505VUILD68Homo sapiensMaleEuropean69 yearsAdultIPF
LMSP0000001506VUILD69Homo sapiensMaleEuropean64 yearsAdultIPF
LMSP0000001443VUILD73Homo sapiensMaleOther65 yearsAdultIPF
LMSP0000001444VUILD77Homo sapiensMaleHispanic/Latino62 yearsAdultIPF
LMSP0000001442VUILD79Homo sapiensFemaleEuropean59 yearsAdultIPF
LMSP0000001465VUILD82Homo sapiensMaleSouth Asian56 yearsAdultIPAF
LMSP0000001466VUILD83Homo sapiensMaleEuropean67 yearsAdultIPF
LMSP0000001467VUILD84Homo sapiensMaleEuropean61 yearsAdultIPF
LMSP0000001528VUILD85Homo sapiensMaleEuropean55 yearsAdultCWP
LMSP0000001529VUILD86Homo sapiensMaleEuropean64 yearsAdultCWP
LMSP0000001530VUILD87Homo sapiensFemaleEuropean68 yearsAdultIPF
LMSP0000001468VUILD88Homo sapiensFemaleEuropean65 yearsAdultIPF
LMSP0000001511VUILD89Homo sapiensMaleEuropean50 yearsAdultCWP
LMSP0000001469VUILD90Homo sapiensFemaleEuropean53 yearsAdultCTD-ILD
LMSP0000001470VUILD91Homo sapiensMaleEuropean65 yearsAdultIPF
LMSP0000001471VUILD92Homo sapiensFemaleEuropean56 yearsAdultILD
LMSP0000001446VUILD93Homo sapiensMaleEuropean61 yearsAdultIPF
LMSP0000001447VUILD95Homo sapiensFemaleEuropean64 yearsAdultCTD-ILD
LMSP0000001448VUILD96Homo sapiensFemaleAfrican American61 yearsAdultSarcoidosis
LMSP0000001449VUILD97Homo sapiensMaleEuropean70 yearsAdultIPF
LMSP0000001531VUILD98Homo sapiensMaleEuropean59 yearsAdultIPF
LMSP0000001532VUILD99Homo sapiensMaleEuropean65 yearsAdultCTD-ILD